R Biplot Color By Group

Are you ready to join us?. There's one more detail that we need to take care of. Multiple factor analysis (MFA) is used to analyze a data set in which individuals are described by several sets of variables (quantitative and/or qualitative) structured into groups. Following my introduction to PCA, I will demonstrate how to apply and visualize PCA in R. Group is for collective geoms. How to do that? I am a R newby and having a hard time at the moment trying to make a plot like yours. The compounds are also shown and appear to form two distinct groups. The Licensed Practical Nurse (LPN) is an integral part of the health care team. Color Kinetics delivers high-performance professional LED lighting systems in a wide range of types, form factors, and output levels — empowering lighting professionals around the world to achieve their unique visions. Fiverr connects businesses with freelancers offering digital services in 250+ categories. Sharp provides medical services in virtually all fields of medicine, including primary care, heart care, cancer treatment, orthopedics and women’s health. Home; Employee Resource Group Consulting; Latino Talent Management Initiatives. We investigate the properties of these methods and compare their performances by analyzing various types of well-known gene expression data. Sales, Supplies, and Service. Nice attachment points on the outside, and well designed side pockets, for example. Sunday February 3, 2013. 0,就应选CCA(基于单峰模型,典范对应分析). Metz Culinary Management is a provider of dining management services, named one of the Top 20 Management Companies in the U. Robert Schick I did the following, and had it plot as needed: Problem was in my (lack of) understanding of codes() But my second question is this: is there a way to color code the points on the first two PCA axes by group id within a biplot. We’re embraced by the world’s most successful sales and service organizations because we deliver results – no matter what comes next. It produces a scatterplot showing how the rows (columns) differ in terms of the column (rows) attributes. The colors of filled objects, like bars, can be set using fill="red". Choose between business or home office solutions and get the quality product you need. Making Maps with R Intro. Customising vegan's ordination plots As a developer on the vegan package for R, one of the most FAQs is how to customise ordination diagrams, usually to colour the sample points according to an external grouping variable. The answers: 1. Today, The Khronos Group announces that its Analytic Rendering Exploratory Group has received strong industry support and is transitioning to a full Working Group to create an analytic rendering interface API for data visualization. Dear All, I am very new to R - trying to teach myself it for some MSc coursework. There's one more detail that we need to take care of. Reading A-Z Ranked #1 by Teachers. R color cheatsheet Finding a good color scheme for presenting data can be challenging. ggbiplot aims to be a drop-in replacement for the built-in R function biplot. fviz_pca() provides ggplot2-based elegant # ' visualization of PCA outputs from: i) prcomp and princomp [in built-in R. Statistika Deskriptif Latar Belakang Hasil Riset Kesehatan Dasar (Riskesdas) tahun 2007 2. A graduate of the United States Air Force Academy, Wachenheim has been an assistant coach at various positions for nine different teams, ranging from the NCAA Division I FBS and FCS to a brief stint in the National Football League (NFL). The realities of computer arithmetic can cause unexpected results, especially with floor and ceiling. The R package 'manipulate' can be used to create interactive plots in RStudio. This R graphics tutorial describes how to change line types in R for plots created using either the R base plotting functions or the ggplot2 package. $\begingroup$ I might recommend to stress verbally the "moral" of the difference between the "axes biplot" and the "loadings biplot" on the scan. 486 pokazala su da od 40 najčitanijih magazina u Srbiji čak 25 izdaje Color Press Grupa. Race/Color Discrimination. 8111 Main Logo. For this, I will use the. (2 replies) I've tried a few things both with prcomp(), and rda() and its friends in vegan (including biplot. Ravelry is a community site, an organizational tool, and a yarn & pattern database for knitters and crocheters. See help(rgb) for more information. The sorting algorithm would assign the first color to "Banana" in set C but the second color to "Banana" in set A. Harding Charter. rda and ordiplot), but can't find a solution. Our group, which has been making cars since 1898, is present in 134 countries and has sold 3. fviz_pca_biplot(res. BLACK ENTERPRISE is the premier resource for black entrepreneurs, black-owned businesses, and career, tech, and money content for black people. Everything Christian for Less for over 40 years. ggplot2 is a plotting package that makes it simple to create complex plots from data in a dataframe. It produces a scatterplot showing how the rows (columns) differ in terms of the column (rows) attributes. We investigate the properties of these methods and compare their performances by analyzing various types of well-known gene expression data. With digital printing, you can create photo-real images on the. points is a generic function to draw a sequence of points at the specified coordinates. Dear R-help fellows good afternoon. In 1979, the family began producing conveyor ovens and manual textile printers for smaller screen printing operations. Note: , where n P r is the formula for permutations of n objects taken r at a time. Built on talent, technology, and trust, Grace high-performance specialty chemicals and materials improve the products and processes of our customers around the world. # Simple Dotplot. Get information on 25 million businesses and 245 million consumers. Whether you’re looking for machine help, or you need drivers, software updates, manuals or guides, you can find it here. Filariasis Analisis biplot. net Please do not post outside links with permission. I haven't yet had the time to try what the statistician said should work without distortion, but I might have some time this week. After children have practiced with the dotted tracer, practice writing the color words independently using lined paper suitable for preschool, K and primary level. Tagged makes it easy to meet and socialize with new people through games, shared interests, friend suggestions, browsing profiles, and much more. We will make the same plot using the ggplot2 package. SunTrust Private Wealth Management, International Wealth Management, GenSpring, Business Owner Specialty Group, Sports and Entertainment Group, and Legal and Medical Specialty Groups are marketing names used by SunTrust Bank now Truist Bank, SunTrust Investment Services, Inc. We use cookies to personalize content and ads, to provide social media features and to analyze our traffic. INTERNATIONAL COLOR CONSORTIUM. Electric scooters, ride-ons, hoverboards, and more from the brand with 20 years of innovation. Miller Heiman Group provides the sales training, consulting, technology and research sellers need to stay one step ahead of disruption. Configure your own kitchen with the new Cosentino Kitchen 3D to your project goes live. Book your flights with Etihad Airways today. This triggered a nerdy reaction in me that I had to put in a basic function. Aggregations. (3) biplot graphic. Customising vegan's ordination plots. com For all other inquiries email [email protected] Reaching the Lost. princomp() groups. There are many variations on biplots (see the references) and perhaps the most widely used one is implemented by biplot. Tagged - The social network for meeting new people The social network for meeting new people :). Masco Cabinetry manufactures three nationally recognized cabinetry brands, KraftMaid®, Merillat® and QualityCabinets®. Stop by your nearest location for document copying in color or B&W. When making a PCA analysis I needed a biplot function that would show the scores divided by groups. Explore Avon's site full of your favorite products, including cosmetics, skin care, jewelry and fragrances. Density ridgeline plots. # ' Create an ordination biplot using ggplot2 including options for selecting axes, group color aesthetics, and selection of variables to plot. See Colors (ggplot2) and Shapes and line types for more information about colors and shapes. # How many observations are in the data set? nrow (diamonds) ## [1] 53940 # b) How many variables are in the data set? ncol (diamonds) ## [1] 10. However, you should keep in mind that data distribution is hidden behind each box. The default is to use a different hue on the color wheel for each factor level, but it is also possible to manually specify the colors for each level. Bean - The Outside Is Inside Everything We Make. Pioneer of do-it-yourself automotive wiring systems. Control ggplot2 boxplot colors. com your online source for brick, bricks, face brick and pavers. > Hi, > > The princomp() function has a nice method to generate a pretty biplot of > the data. You can see how much data your group has used, set up data alerts for yourself or others, or even split the bill with your group plan members. Our core businesses include film coatings, modified release technologies, functional excipients and tablet design services. If a data matrix is supplied (possibly via a formula) it is required that there are at least as many units as variables. Will plot factor scores and factor loadings in the same graph. For more information on how to interpret the chart see Principal Components Analysis Biplot. Most of the genes associated with eye color are involved in the production, transport, or storage of a pigment called melanin. Default value is "all". Change the R base plot pch symbols and appearance. Create Power BI visuals using R. Please read more explanation on this matter, and consider a violin plot or a ridgline chart instead. The hope is that points will show > some kind of clustering by group in the biplot. Line graphs. A biplot based on ggplot2. OKLAHOMA CITY (AP) — A college recruiter was fired after high school students in Oklahoma City said he had them line up by the color of their skin and then by their hair texture. Hi there, I’m completely new to R currently learning the basics - as a colleague mentioned R may useful to simulate my research. It produces a scatterplot showing how the rows (columns) differ in terms of the column (rows) attributes. Created by Stanford-trained Dermatologists, we understand skin. It often produces reasonable looking biplots where the points corresponding to observations and the arrows corresponding to variables are given equal weight. The IMLPlus language includes functions that transfer data between SAS data sets and R data frames, and between SAS/IML matrices and R matrices. News and information from UPS, track your shipment, create a new shipment or schedule a pickup, caluclate time and costs or find a. Deluxe is the global partner to leading content creators and distributors. This video conceptually shows the estimation of principal components, go through the math of centering and scaling and gives intuition on interpretation of biplot and global- vs local (variable. This triggered a nerdy reaction in me that I had to put in a basic function. A more recent and much more powerful plotting library is ggplot2. If option biplot is TRUE,. The colors of filled objects, like bars, can be set using fill="red". Discover the freedom to be you. Factor score histograms are plotted on the diagonal. The star of 'Mad Men' and the new Netflix series 'Spinning Out' knows what she wants, and she isn't afraid to go after it. Purchase it from Amazon, or direct from O'Reilly. (See the hexadecimal color chart below. Ecopy contains numerous methods for ordination, that is, plotting points in reduced space. I know it will be quite difficult in the begining but I want to learn it. This is pretty easy to build thanks to the facet_wrap() function of ggplot2. Ignore if you don't need this bit of support. Tag Archives: ggplot2 Color-coded chunks at each time step indicate the relative importance or dominance of each group. Handling overplotting. Using an of 0 (or 1) causes the points (or. I will be showing two ways which you can do this. GRT Jewellers is one of the India's foremost jewellery store having an exquisite collection of jewellery in Gold, Diamond, Platinum and Silver created by the finest artisans of India. If y is missing barplot is produced. Affected individuals have trouble distinguishing between some shades of red, yellow, and green. I still don't like how the rescale that I performed distorted the graph, but the associations that were there in the biplot were also there in the ggplot2(biplot). The official website for planning your Rocky Mountaineer train journey. Get information on 25 million businesses and 245 million consumers. If provided the points will be colored according to groups. A polygon consists of multiple rows of data so it is a collective geom. A biplot based on ggplot2. Book your flights with Etihad Airways today. Panel Function for Display Marked by groups Description. Go, Slow, Whoa is a simple way to recognize foods that are the smartest choices. Dear All, I am very new to R - trying to teach myself it for some MSc coursework. Click here if you're looking to post or find an R/data-science job. Play thousands of free online trivia quiz games. Created by Stanford-trained Dermatologists, we understand skin. Multiple Correspondence Analysis (MCA) is an extension of simple CA to analyse a data table containing more than two categorical variables. Rush Nation, we can't thank you enough for your outstanding support during the 2019-20 campaign! With that being said, we have officially begun our renewal process for the 2020-21 ECHL season!. Power Home Remodeling 888. Maruti Suzuki sells hatchbacks, sedans, MUVs and SUVs in India through its ARENA and NEXA channels, certified pre-owned cars through TRUE VALUE, and commercial vehicles through its Maruti Suzuki Commercial channel. View Tutorial. color name color name gray8 gray9 gray10 gray11 gray12 gray13 gray14 gray15 gray16 gray17 gray18 gray19 gray20 gray21 gray22 gray23 gray24 gray25 gray26 gray27 gray28. Reaching the Lost. This is pretty easy to build thanks to the facet_wrap() function of ggplot2. InfoUSA is the industry leader for business and consumer lists and sales leads. R graph gallery The blog is a collection of script examples with example data and output plots. Affected individuals have trouble distinguishing between some shades of red, yellow, and green. Whether you’re looking for machine help, or you need drivers, software updates, manuals or guides, you can find it here. Choose between business or home office solutions and get the quality product you need. We use cookies to personalize content and ads, to provide social media features and to analyze our traffic. With tools for job search, resumes, company reviews and more, we're with you every step of the way. The relationships among the four clusters are revealed by their color coding on the biplot. The GEO Group is committed to providing leading, evidence-based rehabilitation programs to individuals while in-custody and post-release into the community through the "GEO Continuum of Care. dplyr is a grammar of data manipulation, providing a consistent set of verbs that help you solve the most common data manipulation challenges: mutate() adds new variables that are functions of existing variables; select() picks variables based on their names. Disney Parks, Experiences and Consumer Products brings Disney’s stories, characters and franchises to life through Parks and Resorts, toys, apps, apparel, books and stores. The plot_ordination function can also automatically create two different graphic layouts in which both the samples and OTUs are plotted together in one "biplot". (this is called a biplot), which helps to interpret the factorial axes while looking at individuals' location. grand-mean centered biplot Biplot based on grand-mean centered data. We use cookies to personalize content and ads, to provide social media features and to analyze our traffic. In this paper, we review several variants of biplot methods such as principal component analysis biplot, factor analysis biplot, multidimensional scaling biplot and correspondence analysis biplot. Latest news View all Insights Group announces industry-leading results. The argument method can be either ’svd’ for complete-data or ’nipals’ for missing-data. The package provides two functions: ggscreeplot() and ggbiplot(). Stop by your nearest location for document copying in color or B&W. size=2, notch=FALSE). 5 is called a symmetric factorization biplot or symmetrically scaled biplot. Principal coordinates analysis (PCoA) of the Bray-Curtis distance between the MUFA and PUFA oil treatments within overweight group. by defining aesthetics (aes)Add a graphical representation of the data in the plot (points, lines, bars) adding "geoms" layers. UnitedHealth Group (NYSE: UNH) and its UnitedHealthcare and Optum businesses are donating $150,000 to help residents of Tennessee recover and rebuild from the tornadoes and severe weather around Nashville. To speed up the speed of data analysis and drawing for beginners, we have created a QQ group: 335774366. SAS/IML Studio includes an experimental interface to the R language. CBT Nuggets has the premier Online IT Training Videos and IT Certification Training. Generic function for plotting of R objects. This is done with stat_bin, which calculates the number of cases in each group (if x is discrete, then each x value is a group; if x is continuous, then all the data is automatically in one group, unless you specifiy grouping with group=xx). The hope is that points will show > some kind of clustering by group in the biplot. It makes the code more readable by breaking it. (this is called a biplot), which helps to interpret the factorial axes while looking at individuals' location. for compatibility with biplot. prob probability (default to ) for each group. An implementation of the biplot using ggplot2. The American Watercolor Society is a non-profit membership organization that began in 1866 to promote the art of watercolor painting in America. # Simple Dotplot. Basis; Beeline; Formation; Nonstop; Principle. For this, I will use the. Johns Manville is committed to manufacturing premium-quality insulation, commercial roofing and building materials. The file I am trying to load is not ill-formatted it opens nicely in Meshlab. I am plotting temperature data for two different sites over the. The function below includes an argument emphasize. R graph gallery The blog is a collection of script examples with example data and output plots. Our responsibilities include the collection, processing, calibration, validation, archive and distribution of ocean-related products from a large number of operational, satellite-based remote-sensing missions providing ocean color, sea surface temperature and sea surface. Will plot factor scores and factor loadings in the same graph. When you measure your progress, you stay on track, reach your target dates, and experience the exhilaration of achievement that spurs you on to continued effort required to reach your goal. Multi-Color Corporation services these markets around the world with business interests in the North American, Latin American, EMEA (Europe, Middle East and Africa) and Asia Pacific regions. An implementation of the biplot using ggplot2. In this post we will see examples of making scatter plots and coloring the data points using Seaborn in Python. Pinterest helps you discover and do what you love. Let us see how to Create a Scatter Plot, Format its size, shape, color, adding the linear progression, changing the theme of a Scatter Plot using ggplot2 in R Programming language with an example. Through smarter work streams, the best talent, and scaled technology across the world, Deluxe enables creative visions to come to life and ensures they get to everyone who wants to see them. This is doable by specifying a different color to each group with the color argument of ggplot2. Use h to query and modify properties of specific graphics objects. Different color scales can be apply to it, and this post describes how to do so using the ggplot2 library. Home, life and car insurance from Farmers Insurance. They are important for someone interested in a quick start with R and Bioconductor. Partner with us today. Welcome to Bluebeat Music, Your Blues Music Specialists! Bluebeat Music has one of the largest selections of blues titles on the internet. Here are the most popular colors, by gender. McMurdie and Susan Holmes Statistics Department, Stanford University, Stanford, CA 94305, USA. The Kelley Blue Book ® Price Advisor shows you new car pricing and used car pricing based on what others have paid near you for the car you want. We help people respond effectively to injustice in the world around us. Harding Charter. The goal of this article is to describe how to change the color of a graph generated using R software and ggplot2 package. Affordability and Performance Among Top Gen Z Desires From Product InnovationSome 82% of Gen Z consumers say they're more likely to support a company that makes changes based on customer feedback. These colors are part of the surface of an object. Display easily the list of pch in R. A friend of mine told me that she was spending her day colouring R plot because she never understood how to put color in them. Indiscriminant substitution of materials in a set of P-Numbers or Group Numbers may lead to problems or potentially failures. Default value is "all". My book about data visualization in R is available! The book covers many of the same topics as the Graphs and Data Manipulation sections of this website, but it goes into more depth and covers a broader range of techniques. colour coded points in biplot. Enjoy free shipping on all orders. Everything that exists in R is an object, and everything that is done (data transformations, plotting, operations) in R is a function. The package provides two functions: ggscreeplot() and ggbiplot(). American Airlines has airline tickets, cheap flights, vacation packages and American Airlines AAdvantage bonus mile offers at AA. Other readers will always be interested in your opinion of the books you've read. NN/g principals pioneered many of the UX research methods which have now become the standard best practices. We also share information about your use of our site with our social media, advertising and analytics partners who may combine it with other information that you’ve provided to them or that they’ve collected from your use of their services. The singular value decomposition of x is used to calculate the principal components for the biplot. 8 million vehicles in 2019. Add Points to a Plot Description. fviz_mca() provides ggplot2-based elegant visualization of MCA outputs from the R functions: MCA [in FactoMineR], acm [in ade4], and expOutput/epMCA [in ExPosition]. The ICC encourages vendors to support the ICC profile format and the workflows required to use ICC profiles. Designed for baby, infant, toddler, and pre-k learning levels, shop interactive tech toys at VTech. The Cole R-1 School District provides an academic program that focuses on the development of reading, language arts, and math skills in lower grades. Coloring will aid your child with holding a writing tool the right way which helps the development of their finger, hand and wrist muscles. plot(rm) plots the measurements in the repeated measures model rm for each subject as a function of time. You will get a 3D image of your kitchen. But the best solution for his plot, was two different legends: one for group levels and one for the CI horizontal lines. Now is the time to make sure you are working in the appropriate directory on your computer, perhaps through the use of an RStudio. Demo: phyloseq - A Bioconductor package for handling and analysis of high-throughput phylogenetic sequence data Paul J. Additionally, we show how to add concentration ellipses and confidence ellipses by groups. Color accepts either a string of a hex color '#333' or a object of rgb or hsl values { r: 51, g: 51, b: 51 } or { h: 0, s: 0, l:. 150+ Stores. We use cookies to personalize content and ads, to provide social media features and to analyze our traffic. And coloring scatter plots by the group/categorical variable will greatly enhance the scatter plot. fviz_pca: Quick Principal Component Analysis data visualization - R software and data mining. Biplots If option 'biplot' is TRUE, a biplot showing both the PCA results (samples) and variables is shown. Heat maps and clustering are used frequently in expression analysis studies for data visualization and quality control. For more information on how to interpret the chart see Principal Components Analysis Biplot. Dear All, I am very new to R - trying to teach myself it for some MSc coursework. Output: Color by groups. Click here if you're looking to post or find an R/data-science job. Toys”R”Us is the leading kids store for all toys, video games, dolls, action figures, learning games, building blocks and more. prob probability (default to ) for each group. draw a normal data ellipse for each group? ellipse. There is no shortage of ways to do principal components analysis (PCA) in R. The goal of this article is to describe how to change the color of a graph generated using R software and ggplot2 package. Gabriel, K. At Omnicom Media Group we are committed to expanding opportunities for all employees without regard to race, color, religion, gender, age, national origin, sexual orientation, gender expression, disability or any other characteristic. The hope is that points will show > some kind of clustering by group in the biplot. There is a fun quiz about virtually every topic imaginable: Geography, History, Sports, Music, TV and more!. Each hexagon is assigned a color based on the number of observations that fall within its boundaries. Explore our plans, benefits, deals, and a stronger network that's paving the way for a 5G future. Color Guard is a combination of the use of flags, sabers, mock rifles, and other equipment, as well as dance and other interpretive movement. In the simplest case, we can pass in a vector and we will get a scatter plot of magnitude vs index. NN/g principals pioneered many of the UX research methods which have now become the standard best practices. When the PCH is 21-25, the parameter "col=" and "bg=" should be specified. We’ve spent decades developing our single-source network products, services, and solutions. There are many variations on biplots (see the references) and perhaps the most widely used one is implemented by biplot. The 91st Bomb Group Memorial Association's (BGMA) purpose is to keep alive the spirit of the 91st BG (H) and to maintain the fellowship of all those who fought together in WWII from AF Station 121 in Bassingbourn, England from 1942 - 1945. We believe there are no limits to what an image can do. The color palettes are provided as ggplot2 scale functions: scale_color_npg() and scale_fill_npg(): Nature Publishing Group color palettes. The density ridgeline plot is an alternative to the standard geom_density() function that can be useful for visualizing changes in distributions, of a continuous variable, over time or space. View Tutorial. This is one in a series of tutorials in which we explore basic data import, exploration and much more using data from the Gapminder project. 2307/2334381. Charts, Data and Research for Marketers. In this article, you will learn how to easily create a histogram by group in R using the ggplot2 package. Accelerate success with the brand you know and trust — transformed for today's business needs. Ordination¶. ggplot2 Quick Reference: colour (and fill) Specifying Colours. If 0, color is white. For any other type of y the next plot method is called, normally plot. RGB and COLOR search engine. Segmenting data into appropriate groups is a core task when conducting exploratory analysis. Black and white cats generated on a television. One of the most common tests in statistics, the t-test, is used to determine whether the means of two groups are equal to each other. You can host standalone apps on a webpage or embed them in R Markdown documents or build dashboards. It often produces reasonable looking biplots where the points corresponding to observations and the arrows corresponding to variables are given equal weight. 0,就应选CCA(基于单峰模型,典范对应分析). You can preview it at Google Books. Our easy-to-use Regimens take the guesswork out of skincare so you can see transformative results. Building better health for the commonwealth. Find out if The Color Purple is coming to a city near you. Engineering assessment is necessary prior to a change in materials. Already being used in nearly half of the school districts in the U. Atrium manufactures energy efficient replacement windows, new-construction windows and patio doors designed to increase the comfort and beauty of any home. geom_smooth ignores any group variable if no color aesthetic is defined; geom_smooth inherits by default the color definition from the global aesthetics but not the group definition. Try hues from all three indulgent finishes: Cream, Demi Matte and Metallic. They are no longer four qualitatively distinct entries, but a continuum of locally adjacent groupings arrayed along a nonlinear dimension from floral to medicinal. Convert color data into different standards and color spaces. No right is granted to copy, modify, reproduce, translate, or create any derivative work by any means whether electronic or mechanical. type=3 produce graphs on a 2d point set that are all subgraphs of the Delaunay triangulation with relative neighbor graph. Sharp provides medical services in virtually all fields of medicine, including primary care, heart care, cancer treatment, orthopedics and women’s health. For line graphs, the data points must be grouped so that it knows which points to connect. Group is for collective geoms. round and signif are members of the Math2 group generic. Tweezerman is the leading brand in award-winning premium beauty tools. optional factor variable indicating the groups that the observations belong to. This is doable by specifying a different color to each group with the color argument of ggplot2. You can change the colors of the bars, meaning one different color for each group. GGE3 biplot Biplot based on tester Stderr standardized data. alpha ranges from 0 to 1. Start learning today with flashcards, games and learning tools — all for free. Quizlet makes simple learning tools that let you study anything. With digital printing, you can create photo-real images on the. Gabriel and Odoroff (1990) use the same definitions, but their plots actually correspond to pc. But generally, we pass in two vectors and a scatter plot of these points are plotted. 00 is the least and FF is the most intense. size of the ellipse in Normal probability. Tagged - The social network for meeting new people The social network for meeting new people :). Colorfully BEHR Blog. The following code displays histograms and density plots for the observations in each group on the first linear discriminant dimension. 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A designer tool for creating color combinations that work together well. If the number of factors > 2, then all pairs of factors are plotted. Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.